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  5. MA_5039g0010

MA_5039g0010


Description : transcription factor (RAV/NGATHA)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000986 (SeedPlants) Phylogenetic Tree(s): OG_06_0000986_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_5039g0010
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00114p00142630 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
LOC_Os01g04800.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
LOC_Os08g06120.1 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_3503583g0010 No alias transcription factor (RAV/NGATHA) 0.05 Archaeplastida
MA_865117g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 Archaeplastida
Mp2g22250.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
Smo110104 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
Zm00001e000156_P001 No alias transcription factor (RAV/NGATHA) 0.06 Archaeplastida
Zm00001e016956_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
Zm00001e020092_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
Zm00001e032325_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
Zm00001e039393_P002 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 26 128
No external refs found!