AT5G53720


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000639 (Archaeplastida) Phylogenetic Tree(s): OG0000639_tree ,
OG_05_0000548 (LandPlants) Phylogenetic Tree(s): OG_05_0000548_tree ,
OG_06_0000334 (SeedPlants) Phylogenetic Tree(s): OG_06_0000334_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G53720
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00053460 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Archaeplastida
AT5G11412 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
GSVIVT01037134001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_39058 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.01 Archaeplastida
LOC_Os01g72834.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os02g48340.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os06g11730.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
MA_10436590g0030 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
Smo100311 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc04g049920.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc04g074310.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e030837_P006 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004044 amidophosphoribosyltransferase activity IEP Neighborhood
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005788 endoplasmic reticulum lumen IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0008216 spermidine metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009113 purine nucleobase biosynthetic process IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009556 microsporogenesis IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0009820 alkaloid metabolic process IEP Neighborhood
BP GO:0009821 alkaloid biosynthetic process IEP Neighborhood
BP GO:0009943 adaxial/abaxial axis specification IEP Neighborhood
BP GO:0010152 pollen maturation IEP Neighborhood
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP Neighborhood
BP GO:0010208 pollen wall assembly IEP Neighborhood
BP GO:0010584 pollen exine formation IEP Neighborhood
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Neighborhood
MF GO:0015271 outward rectifier potassium channel activity IEP Neighborhood
MF GO:0015645 fatty acid ligase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016207 4-coumarate-CoA ligase activity IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016621 cinnamoyl-CoA reductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0018685 alkane 1-monooxygenase activity IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0030638 polyketide metabolic process IEP Neighborhood
BP GO:0030639 polyketide biosynthetic process IEP Neighborhood
MF GO:0031956 medium-chain fatty acid-CoA ligase activity IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034293 sexual sporulation IEP Neighborhood
BP GO:0035337 fatty-acyl-CoA metabolic process IEP Neighborhood
BP GO:0035384 thioester biosynthetic process IEP Neighborhood
BP GO:0035445 borate transmembrane transport IEP Neighborhood
BP GO:0042335 cuticle development IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043934 sporulation IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0046713 borate transport IEP Neighborhood
MF GO:0046715 active borate transmembrane transporter activity IEP Neighborhood
BP GO:0046949 fatty-acyl-CoA biosynthetic process IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048236 plant-type sporogenesis IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048658 anther wall tapetum development IEP Neighborhood
BP GO:0048859 formation of anatomical boundary IEP Neighborhood
MF GO:0050734 hydroxycinnamoyltransferase activity IEP Neighborhood
BP GO:0051321 meiotic cell cycle IEP Neighborhood
BP GO:0051791 medium-chain fatty acid metabolic process IEP Neighborhood
BP GO:0051792 medium-chain fatty acid biosynthetic process IEP Neighborhood
BP GO:0071616 acyl-CoA biosynthetic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0072532 tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072533 tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072547 tricoumaroylspermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072548 dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072549 monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072550 triferuloylspermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072551 diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072552 monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEP Neighborhood
MF GO:0080030 methyl indole-3-acetate esterase activity IEP Neighborhood
MF GO:0080072 spermidine:sinapoyl CoA N-acyltransferase activity IEP Neighborhood
MF GO:0080073 spermidine:coumaroyl CoA N-acyltransferase activity IEP Neighborhood
MF GO:0080074 spermidine:caffeoyl CoA N-acyltransferase activity IEP Neighborhood
MF GO:0080075 spermidine:feruloyl CoA N-acyltransferase activity IEP Neighborhood
BP GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process IEP Neighborhood
BP GO:0080110 sporopollenin biosynthetic process IEP Neighborhood
MF GO:0090439 tetraketide alpha-pyrone synthase activity IEP Neighborhood
BP GO:0090691 formation of plant organ boundary IEP Neighborhood
BP GO:0098661 inorganic anion transmembrane transport IEP Neighborhood
BP GO:1900150 regulation of defense response to fungus IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 11 79
No external refs found!