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  5. AT5G53840

AT5G53840


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0001957 (Archaeplastida) Phylogenetic Tree(s): OG0001957_tree ,
OG_05_0001277 (LandPlants) Phylogenetic Tree(s): OG_05_0001277_tree ,
OG_06_0000660 (SeedPlants) Phylogenetic Tree(s): OG_06_0000660_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G53840
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G16940 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT1G32020 No alias F-box family protein 0.11 Archaeplastida
AT1G60400 No alias F-box/RNI-like superfamily protein 0.1 Archaeplastida
AT1G66640 No alias RNI-like superfamily protein 0.05 Archaeplastida
AT1G78750 No alias F-box/RNI-like superfamily protein 0.1 Archaeplastida
AT4G13985 FBD1 FBD-associated F-box protein 0.03 Archaeplastida
AT5G22590 No alias Leucine Rich Repeat protein family 0.04 Archaeplastida
AT5G22600 No alias FBD / Leucine Rich Repeat domains containing protein 0.03 Archaeplastida
AT5G22670 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT5G22720 No alias F-box/RNI-like superfamily protein 0.07 Archaeplastida
AT5G25850 No alias F-box/RNI-like/FBD-like domains-containing protein 0.11 Archaeplastida
AT5G27750 No alias F-box/FBD-like domains containing protein 0.04 Archaeplastida
AT5G44940 No alias F-box/RNI-like superfamily protein 0.1 Archaeplastida
AT5G44950 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT5G44960 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G44970 No alias Protein with RNI-like/FBD-like domains 0.08 Archaeplastida
AT5G44980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.1 Archaeplastida
AT5G53635 No alias F-box/RNI-like/FBD-like domains-containing protein 0.1 Archaeplastida
AT5G53640 No alias CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process TAS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
CC GO:0000311 plastid large ribosomal subunit IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0010315 auxin efflux IEP Neighborhood
BP GO:0010541 acropetal auxin transport IEP Neighborhood
MF GO:0045309 protein phosphorylated amino acid binding IEP Neighborhood
MF GO:0051219 phosphoprotein binding IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 163 188
IPR006566 FBD 364 406
IPR001810 F-box_dom 20 55
No external refs found!