MA_52027g0010

Description : transcription factor (SBP)

Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0001192 (LandPlants) Phylogenetic Tree(s): OG_05_0001192_tree ,
OG_06_0004431 (SeedPlants) Phylogenetic Tree(s): OG_06_0004431_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_52027g0010
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00058370	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.SBP...	0.03	Archaeplastida
Cre01.g012200	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
Cre07.g345050	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
Gb_26599	No alias	transcription factor (SBP)	0.04	Archaeplastida
LOC_Os08g40260.1	No alias	transcription factor (SBP)	0.03	Archaeplastida
MA_10427464g0010	No alias	transcription factor (SBP)	0.05	Archaeplastida
MA_10427464g0040	No alias	transcription factor (SBP)	0.06	Archaeplastida
MA_10434066g0020	No alias	Squamosa promoter-binding-like protein 15 OS=Oryza...	0.07	Archaeplastida
MA_16835g0010	No alias	Squamosa promoter-binding-like protein 1 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e003571_P002	No alias	transcription factor (SBP)	0.02	Archaeplastida
Zm00001e011712_P002	No alias	transcription factor (SBP)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
CC	GO:0044217	other organism part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0032039	integrator complex	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	140	213

External Links

No external refs found!