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  5. MA_5258g0010

MA_5258g0010


Description : no description available(sp|g3chk5|elf5_pontr : 157.0)


Gene families : OG0005325 (Archaeplastida) Phylogenetic Tree(s): OG0005325_tree ,
OG_05_0005035 (LandPlants) Phylogenetic Tree(s): OG_05_0005035_tree ,
OG_06_0006113 (SeedPlants) Phylogenetic Tree(s): OG_06_0006113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_5258g0010
Cluster HCCA: Cluster_408

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00026270 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
Gb_27823 No alias no description available(sp|g3chk5|elf5_pontr : 191.0) 0.02 Archaeplastida
Mp2g02580.1 No alias no description available(sp|g3chk5|elf5_pontr : 159.0) 0.02 Archaeplastida
Solyc06g071140.3.1 No alias no description available(sp|g3chk5|elf5_pontr : 245.0) 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR019007 WW_dom-bd_prot_11 128 183
No external refs found!