AT5G54520

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0007407 (Archaeplastida) Phylogenetic Tree(s): OG0007407_tree ,
OG_05_0005912 (LandPlants) Phylogenetic Tree(s): OG_05_0005912_tree ,
OG_06_0005182 (SeedPlants) Phylogenetic Tree(s): OG_06_0005182_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G54520
Cluster	HCCA: Cluster_24

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005834	heterotrimeric G-protein complex	ISS	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044459	plasma membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048573	photoperiodism, flowering	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905360	GTPase complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription regulatory region sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0000987	proximal promoter sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0003909	DNA ligase activity	IEP	Neighborhood
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Neighborhood
MF	GO:0004592	pantoate-beta-alanine ligase activity	IEP	Neighborhood
MF	GO:0004640	phosphoribosylanthranilate isomerase activity	IEP	Neighborhood
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006261	DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0006266	DNA ligation	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006304	DNA modification	IEP	Neighborhood
BP	GO:0006305	DNA alkylation	IEP	Neighborhood
BP	GO:0006306	DNA methylation	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
CC	GO:0008076	voltage-gated potassium channel complex	IEP	Neighborhood
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Neighborhood
BP	GO:0009875	pollen-pistil interaction	IEP	Neighborhood
BP	GO:0010030	positive regulation of seed germination	IEP	Neighborhood
BP	GO:0010212	response to ionizing radiation	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
BP	GO:0015939	pantothenate metabolic process	IEP	Neighborhood
BP	GO:0015940	pantothenate biosynthetic process	IEP	Neighborhood
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
BP	GO:0018195	peptidyl-arginine modification	IEP	Neighborhood
BP	GO:0018216	peptidyl-arginine methylation	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0032451	demethylase activity	IEP	Neighborhood
MF	GO:0032452	histone demethylase activity	IEP	Neighborhood
BP	GO:0032877	positive regulation of DNA endoreduplication	IEP	Neighborhood
MF	GO:0033746	histone demethylase activity (H3-R2 specific)	IEP	Neighborhood
MF	GO:0033749	histone demethylase activity (H4-R3 specific)	IEP	Neighborhood
CC	GO:0034702	ion channel complex	IEP	Neighborhood
CC	GO:0034703	cation channel complex	IEP	Neighborhood
CC	GO:0034705	potassium channel complex	IEP	Neighborhood
BP	GO:0034969	histone arginine methylation	IEP	Neighborhood
MF	GO:0035197	siRNA binding	IEP	Neighborhood
BP	GO:0036260	RNA capping	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0043985	histone H4-R3 methylation	IEP	Neighborhood
BP	GO:0044728	DNA methylation or demethylation	IEP	Neighborhood
BP	GO:0045596	negative regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045740	positive regulation of DNA replication	IEP	Neighborhood
BP	GO:0048451	petal formation	IEP	Neighborhood
BP	GO:0048453	sepal formation	IEP	Neighborhood
BP	GO:0048497	maintenance of floral organ identity	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Neighborhood
MF	GO:0061980	regulatory RNA binding	IEP	Neighborhood
BP	GO:0090068	positive regulation of cell cycle process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0090700	maintenance of plant organ identity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
CC	GO:1902495	transmembrane transporter complex	IEP	Neighborhood
CC	GO:1990351	transporter complex	IEP	Neighborhood
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Neighborhood
BP	GO:2000105	positive regulation of DNA-dependent DNA replication	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	197	233
IPR001680	WD40_repeat	379	414
IPR001680	WD40_repeat	155	189
IPR001680	WD40_repeat	252	275

External Links

No external refs found!

AT5G54520

Expression Profile

Co-expression Networks

Functional Annotation