1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_54149g0010

MA_54149g0010


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 782.0)


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_54149g0010
Cluster HCCA: Cluster_523

Target Alias Description ECC score Gene Family Method Actions
AT5G19420 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Archaeplastida
Cre16.g691050 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.06 Archaeplastida
Pp3c10_3893V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Archaeplastida
Pp3c14_4760V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Archaeplastida
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
Solyc11g065120.3.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 Archaeplastida
Zm00001e007139_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
Zm00001e028276_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida
Zm00001e028312_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 423 489
IPR000408 Reg_chr_condens 204 252
IPR000408 Reg_chr_condens 97 145
IPR000408 Reg_chr_condens 318 367
IPR000408 Reg_chr_condens 372 419
IPR000408 Reg_chr_condens 149 199
IPR000408 Reg_chr_condens 266 313
No external refs found!