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  5. MA_54574g0010

MA_54574g0010


Description : Protein SABRE OS=Arabidopsis thaliana (sp|q6imt1|sab_arath : 788.0)


Gene families : OG0002914 (Archaeplastida) Phylogenetic Tree(s): OG0002914_tree ,
OG_05_0004076 (LandPlants) Phylogenetic Tree(s): OG_05_0004076_tree ,
OG_06_0003924 (SeedPlants) Phylogenetic Tree(s): OG_06_0003924_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_54574g0010
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00218820 evm_27.TU.AmTr_v1... Cell cycle.cytokinesis.preprophase microtubule... 0.03 Archaeplastida
AT1G58250 SAB Golgi-body localisation protein domain ;RNA pol II... 0.16 Archaeplastida
Cre14.g608050 No alias No description available 0.01 Archaeplastida
GSVIVT01009199001 No alias Cell cycle.cytokinesis.preprophase microtubule... 0.17 Archaeplastida
Gb_21610 No alias microtubule orientation-stabilizing factor (SABRE) 0.16 Archaeplastida
LOC_Os03g47754.1 No alias Protein SABRE OS=Arabidopsis thaliana... 0.13 Archaeplastida
LOC_Os03g47760.1 No alias Protein SABRE OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_10435593g0010 No alias Protein SABRE OS=Arabidopsis thaliana... 0.11 Archaeplastida
Mp7g01470.1 No alias Protein SABRE OS=Arabidopsis thaliana... 0.08 Archaeplastida
Pp3c12_12980V3.1 No alias Golgi-body localisation protein domain ;RNA pol II... 0.17 Archaeplastida
Solyc04g076540.4.1 No alias microtubule orientation-stabilizing factor (SABRE) 0.06 Archaeplastida
Solyc04g076550.3.1 No alias Protein SABRE OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e005147_P002 No alias microtubule orientation-stabilizing factor (SABRE) 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR019443 FMP27_C 589 650
No external refs found!