MA_54628g0010


Description : component psRPL6 of large ribosomal subunit proteome


Gene families : OG0002223 (Archaeplastida) Phylogenetic Tree(s): OG0002223_tree ,
OG_05_0005828 (LandPlants) Phylogenetic Tree(s): OG_05_0005828_tree ,
OG_06_0007430 (SeedPlants) Phylogenetic Tree(s): OG_06_0007430_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_54628g0010
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00057610 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.05 Archaeplastida
AT1G05190 emb2394 Ribosomal protein L6 family 0.09 Archaeplastida
Cre09.g415950 No alias Protein biosynthesis.organelle translation... 0.05 Archaeplastida
GSVIVT01030599001 No alias Protein biosynthesis.organelle translation... 0.06 Archaeplastida
Gb_27916 No alias component psRPL6 of large ribosomal subunit proteome 0.06 Archaeplastida
LOC_Os03g24020.1 No alias component psRPL6 of large ribosomal subunit proteome 0.06 Archaeplastida
LOC_Os03g54040.1 No alias component psRPL6 of large ribosomal subunit proteome 0.05 Archaeplastida
Mp1g03630.1 No alias component psRPL6 of large ribosomal subunit proteome 0.08 Archaeplastida
Pp3c11_25510V3.1 No alias Ribosomal protein L6 family 0.06 Archaeplastida
Pp3s128_40V3.1 No alias Ribosomal protein L6 family 0.07 Archaeplastida
Solyc12g100160.3.1 No alias component psRPL6 of large ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e001699_P002 No alias component psRPL6 of large ribosomal subunit proteome 0.06 Archaeplastida
Zm00001e038182_P002 No alias component psRPL6 of large ribosomal subunit proteome 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 120 194
No external refs found!