AT1G26260 (CIB5)

Aliases : CIB5

Description : cryptochrome-interacting basic-helix-loop-helix 5

Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000091 (LandPlants) Phylogenetic Tree(s): OG_05_0000091_tree ,
OG_06_0000169 (SeedPlants) Phylogenetic Tree(s): OG_06_0000169_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G26260
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00241810	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.02	Archaeplastida
AMTR_s00016p00138470	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.03	Archaeplastida
AMTR_s00022p00228970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AMTR_s00133p00027110	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.04	Archaeplastida
AT1G25330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
GSVIVT01007389001	No alias	External stimuli response.light.UV-A/blue...	0.03	Archaeplastida
GSVIVT01025313001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
GSVIVT01026056001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Gb_07223	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
LOC_Os01g67480.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os02g47660.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
LOC_Os03g51910.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
LOC_Os08g42470.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
LOC_Os09g25040.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
MA_10435000g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_28961g0020	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_9115341g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	Archaeplastida
Mpzg01410.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Pp3c16_7710V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c1_33270V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c21_14114V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c2_620V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
Pp3c6_9520V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Solyc04g005220.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Solyc06g072520.2.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	Archaeplastida
Solyc06g083170.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Zm00001e003701_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Zm00001e005554_P001	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e009823_P002	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e010138_P002	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e010540_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e011866_P002	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e015045_P002	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e018946_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e028489_P003	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e032950_P002	No alias	transcription factor (bHLH)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009911	positive regulation of flower development	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048513	animal organ development	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005802	trans-Golgi network	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0009061	anaerobic respiration	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009734	auxin-activated signaling pathway	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009845	seed germination	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009887	animal organ morphogenesis	IEP	Neighborhood
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0009956	radial pattern formation	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010052	guard cell differentiation	IEP	Neighborhood
BP	GO:0010162	seed dormancy process	IEP	Neighborhood
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	Neighborhood
BP	GO:0010252	auxin homeostasis	IEP	Neighborhood
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Neighborhood
BP	GO:0022611	dormancy process	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
CC	GO:0033597	mitotic checkpoint complex	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0040019	positive regulation of embryonic development	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
BP	GO:0045995	regulation of embryonic development	IEP	Neighborhood
BP	GO:0048479	style development	IEP	Neighborhood
BP	GO:0048480	stigma development	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
BP	GO:0060771	phyllotactic patterning	IEP	Neighborhood
BP	GO:0060772	leaf phyllotactic patterning	IEP	Neighborhood
BP	GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0090691	formation of plant organ boundary	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	232	280

External Links

No external refs found!

AT1G26260 (CIB5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation