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  5. MA_55505g0010

MA_55505g0010


Description : no hits & (original description: none)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0006399 (SeedPlants) Phylogenetic Tree(s): OG_06_0006399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_55505g0010
Cluster HCCA: Cluster_389

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00250160 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT2G39720 RHC2A RING-H2 finger C2A 0.02 Archaeplastida
AT3G10815 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G58720 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G56340 ATCRT1 RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01012890001 No alias No description available 0.06 Archaeplastida
Gb_26865 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os03g16480.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g59760.1 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os06g42700.1 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc01g009000.3.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.03 Archaeplastida
Solyc07g055330.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc08g075910.1.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.03 Archaeplastida
Zm00001e024003_P001 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!