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  5. MA_56119g0010

MA_56119g0010


Description : Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana (sp|q9ca58|pp120_arath : 848.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_56119g0010
Cluster HCCA: Cluster_513

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.03 Archaeplastida
GSVIVT01002056001 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.08 Archaeplastida
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.02 Archaeplastida
Solyc01g096210.4.1 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 271 320
IPR002885 Pentatricopeptide_repeat 341 390
IPR002885 Pentatricopeptide_repeat 551 600
IPR002885 Pentatricopeptide_repeat 656 705
IPR002885 Pentatricopeptide_repeat 166 215
IPR002885 Pentatricopeptide_repeat 481 530
IPR002885 Pentatricopeptide_repeat 98 125
IPR002885 Pentatricopeptide_repeat 729 759
IPR002885 Pentatricopeptide_repeat 239 268
IPR002885 Pentatricopeptide_repeat 139 160
IPR002885 Pentatricopeptide_repeat 407 437
IPR002885 Pentatricopeptide_repeat 442 474
IPR002885 Pentatricopeptide_repeat 618 650
No external refs found!