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Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 533.0)
Gene families : OG0008251 (Archaeplastida) Phylogenetic Tree(s): OG0008251_tree ,
OG_05_0093563 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0074542 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_56660g0010 | |
| Cluster | HCCA: Cluster_308 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00092p00052470 | No alias | Pentatricopeptide repeat-containing protein At1g53600,... | 0.02 | Archaeplastida | |
| Gb_02375 | No alias | RNA editing factor (MEF19) | 0.03 | Archaeplastida | |
| Gb_05648 | No alias | Pentatricopeptide repeat-containing protein At5g16860... | 0.05 | Archaeplastida | |
| Gb_08051 | No alias | Pentatricopeptide repeat-containing protein At5g16860... | 0.07 | Archaeplastida | |
| Smo71785 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
| Smo89343 | No alias | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 580 | 654 |
| IPR002885 | Pentatricopeptide_repeat | 148 | 172 |
| IPR002885 | Pentatricopeptide_repeat | 277 | 307 |
| IPR002885 | Pentatricopeptide_repeat | 481 | 505 |
| IPR002885 | Pentatricopeptide_repeat | 308 | 338 |
| IPR002885 | Pentatricopeptide_repeat | 380 | 406 |
| IPR002885 | Pentatricopeptide_repeat | 249 | 274 |
| IPR002885 | Pentatricopeptide_repeat | 72 | 118 |
| IPR002885 | Pentatricopeptide_repeat | 407 | 455 |
| IPR002885 | Pentatricopeptide_repeat | 174 | 220 |
| No external refs found! |