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  5. MA_57200g0010

MA_57200g0010


Description : transcription factor (NDX)


Gene families : OG0003497 (Archaeplastida) Phylogenetic Tree(s): OG0003497_tree ,
OG_05_0002941 (LandPlants) Phylogenetic Tree(s): OG_05_0002941_tree ,
OG_06_0003214 (SeedPlants) Phylogenetic Tree(s): OG_06_0003214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_57200g0010
Cluster HCCA: Cluster_437

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00031700 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01011024001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
Gb_38590 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo446032 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Zm00001e011339_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e011342_P004 No alias transcription factor (NDX) 0.02 Archaeplastida
Zm00001e021086_P004 No alias transcription factor (NDX) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!