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  5. AT5G55840

AT5G55840


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55840
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.04 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.07 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 Archaeplastida
Gb_18022 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.06 Archaeplastida
LOC_Os12g21930.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.02 Archaeplastida
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_139384g0010 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.07 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 Archaeplastida
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.06 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.11 Archaeplastida
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.06 Archaeplastida
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.04 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0001708 cell fate specification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0005451 monovalent cation:proton antiporter activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006264 mitochondrial DNA replication IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0009880 embryonic pattern specification IEP Neighborhood
BP GO:0010072 primary shoot apical meristem specification IEP Neighborhood
BP GO:0010208 pollen wall assembly IEP Neighborhood
MF GO:0010348 lithium:proton antiporter activity IEP Neighborhood
BP GO:0010351 lithium ion transport IEP Neighborhood
BP GO:0010352 lithium ion export across the plasma membrane IEP Neighborhood
BP GO:0010431 seed maturation IEP Neighborhood
BP GO:0010584 pollen exine formation IEP Neighborhood
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015385 sodium:proton antiporter activity IEP Neighborhood
MF GO:0015491 cation:cation antiporter activity IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0032042 mitochondrial DNA metabolic process IEP Neighborhood
BP GO:0033258 plastid DNA metabolic process IEP Neighborhood
BP GO:0033259 plastid DNA replication IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0040014 regulation of multicellular organism growth IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048438 floral whorl development IEP Neighborhood
BP GO:0048467 gynoecium development IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0051645 Golgi localization IEP Neighborhood
BP GO:0051646 mitochondrion localization IEP Neighborhood
BP GO:0060151 peroxisome localization IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090421 embryonic meristem initiation IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:0140115 export across plasma membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1006 1034
IPR002885 Pentatricopeptide_repeat 165 193
IPR002885 Pentatricopeptide_repeat 444 490
IPR002885 Pentatricopeptide_repeat 757 806
IPR002885 Pentatricopeptide_repeat 581 630
IPR002885 Pentatricopeptide_repeat 652 700
IPR002885 Pentatricopeptide_repeat 196 244
IPR002885 Pentatricopeptide_repeat 371 420
IPR002885 Pentatricopeptide_repeat 266 315
IPR002885 Pentatricopeptide_repeat 1038 1084
IPR033443 PPR_long 848 987
IPR002885 Pentatricopeptide_repeat 543 575
IPR002885 Pentatricopeptide_repeat 333 364
No external refs found!