1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G55970

AT5G55970


Description : RING/U-box superfamily protein


Gene families : OG0001427 (Archaeplastida) Phylogenetic Tree(s): OG0001427_tree ,
OG_05_0009014 (LandPlants) Phylogenetic Tree(s): OG_05_0009014_tree ,
OG_06_0005952 (SeedPlants) Phylogenetic Tree(s): OG_06_0005952_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55970
Cluster HCCA: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
Gb_28554 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_105489g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e033820_P003 No alias RING-H2-class E3 ligase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP Neighborhood
BP GO:0009626 plant-type hypersensitive response IEP Neighborhood
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009789 positive regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009967 positive regulation of signal transduction IEP Neighborhood
BP GO:0010286 heat acclimation IEP Neighborhood
BP GO:0010337 regulation of salicylic acid metabolic process IEP Neighborhood
BP GO:0010483 pollen tube reception IEP Neighborhood
BP GO:0010565 regulation of cellular ketone metabolic process IEP Neighborhood
BP GO:0010647 positive regulation of cell communication IEP Neighborhood
BP GO:0010726 positive regulation of hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0010728 regulation of hydrogen peroxide biosynthetic process IEP Neighborhood
BP GO:0010729 positive regulation of hydrogen peroxide biosynthetic process IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
CC GO:0012505 endomembrane system IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0023056 positive regulation of signaling IEP Neighborhood
MF GO:0030276 clathrin binding IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0034050 host programmed cell death induced by symbiont IEP Neighborhood
BP GO:0044703 multi-organism reproductive process IEP Neighborhood
BP GO:0045493 xylan catabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
BP GO:0048584 positive regulation of response to stimulus IEP Neighborhood
BP GO:0051194 positive regulation of cofactor metabolic process IEP Neighborhood
BP GO:0051703 intraspecies interaction between organisms IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0062012 regulation of small molecule metabolic process IEP Neighborhood
BP GO:0080021 response to benzoic acid IEP Neighborhood
MF GO:0097599 xylanase activity IEP Neighborhood
BP GO:1901419 regulation of response to alcohol IEP Neighborhood
BP GO:1901421 positive regulation of response to alcohol IEP Neighborhood
BP GO:1903426 regulation of reactive oxygen species biosynthetic process IEP Neighborhood
BP GO:1903428 positive regulation of reactive oxygen species biosynthetic process IEP Neighborhood
BP GO:1905957 regulation of cellular response to alcohol IEP Neighborhood
BP GO:1905959 positive regulation of cellular response to alcohol IEP Neighborhood
BP GO:2000379 positive regulation of reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 296 338
No external refs found!