AT5G56410


Description : Protein with RNI-like/FBD-like domains


Gene families : OG0001094 (Archaeplastida) Phylogenetic Tree(s): OG0001094_tree ,
OG_05_0000663 (LandPlants) Phylogenetic Tree(s): OG_05_0000663_tree ,
OG_06_0000324 (SeedPlants) Phylogenetic Tree(s): OG_06_0000324_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56410
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
AT1G05080 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT1G22000 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 Archaeplastida
AT1G55030 No alias RNI-like superfamily protein 0.05 Archaeplastida
AT3G10750 No alias FBD domain family 0.04 Archaeplastida
AT3G26930 No alias Protein with RNI-like/FBD-like domains 0.04 Archaeplastida
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 Archaeplastida
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 Archaeplastida
AT3G49045 No alias No description available 0.03 Archaeplastida
AT4G00160 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT4G26340 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT5G38570 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT5G56325 No alias FBD-like domain family protein 0.04 Archaeplastida
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.04 Archaeplastida
AT5G56430 No alias F-box/FBD-like domains containing protein 0.06 Archaeplastida
AT5G56452 No alias FBD-like domain family protein 0.04 Archaeplastida
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.05 Archaeplastida
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.05 Archaeplastida
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G60610 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP Neighborhood
CC GO:0005815 microtubule organizing center IEP Neighborhood
CC GO:0005819 spindle IEP Neighborhood
CC GO:0005881 cytoplasmic microtubule IEP Neighborhood
BP GO:0006596 polyamine biosynthetic process IEP Neighborhood
BP GO:0006863 purine nucleobase transport IEP Neighborhood
MF GO:0008493 tetracycline transmembrane transporter activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
BP GO:0009309 amine biosynthetic process IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
BP GO:0009652 thigmotropism IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009958 positive gravitropism IEP Neighborhood
CC GO:0010005 cortical microtubule, transverse to long axis IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010089 xylem development IEP Neighborhood
BP GO:0010154 fruit development IEP Neighborhood
BP GO:0010241 ent-kaurene oxidation to kaurenoic acid IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
MF GO:0015665 alcohol transmembrane transporter activity IEP Neighborhood
BP GO:0015851 nucleobase transport IEP Neighborhood
BP GO:0016093 polyprenol metabolic process IEP Neighborhood
BP GO:0016094 polyprenol biosynthetic process IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP Neighborhood
BP GO:0019348 dolichol metabolic process IEP Neighborhood
BP GO:0019408 dolichol biosynthetic process IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033331 ent-kaurene metabolic process IEP Neighborhood
BP GO:0042214 terpene metabolic process IEP Neighborhood
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Neighborhood
MF GO:0042895 antibiotic transmembrane transporter activity IEP Neighborhood
MF GO:0045547 dehydrodolichyl diphosphate synthase activity IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0047632 agmatine deiminase activity IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
CC GO:0055028 cortical microtubule IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 171 195
IPR006566 FBD 367 410
No external refs found!