AT5G56560


Description : FBD, F-box and Leucine Rich Repeat domains containing protein


Gene families : OG0001094 (Archaeplastida) Phylogenetic Tree(s): OG0001094_tree ,
OG_05_0000663 (LandPlants) Phylogenetic Tree(s): OG_05_0000663_tree ,
OG_06_0000324 (SeedPlants) Phylogenetic Tree(s): OG_06_0000324_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56560
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G05080 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT1G32375 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 Archaeplastida
AT3G26930 No alias Protein with RNI-like/FBD-like domains 0.06 Archaeplastida
AT3G49040 No alias F-box/RNI-like superfamily protein 0.07 Archaeplastida
AT3G49045 No alias No description available 0.06 Archaeplastida
AT3G49480 No alias Protein with RNI-like/FBD-like domains 0.04 Archaeplastida
AT3G52690 No alias RNI-like superfamily protein 0.12 Archaeplastida
AT4G00160 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 Archaeplastida
AT4G00315 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT4G10410 No alias Leucine-rich repeat (LRR) family protein 0.03 Archaeplastida
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.07 Archaeplastida
AT4G15060 No alias CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596),... 0.02 Archaeplastida
AT4G26340 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT5G38565 No alias F-box/FBD-like domains containing protein 0.04 Archaeplastida
AT5G38570 No alias F-box/RNI-like superfamily protein 0.11 Archaeplastida
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT5G40750 No alias FBD / Leucine Rich Repeat domains containing protein 0.05 Archaeplastida
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.07 Archaeplastida
AT5G52460 EDA41 FBD, F-box and Leucine Rich Repeat domains containing protein 0.03 Archaeplastida
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT5G56410 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT5G56420 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G56700 No alias FBD / Leucine Rich Repeat domains containing protein 0.03 Archaeplastida
AT5G56810 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 Archaeplastida
AT5G60610 No alias F-box/RNI-like superfamily protein 0.09 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005351 carbohydrate:proton symporter activity IEP Neighborhood
MF GO:0005402 carbohydrate:cation symporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0010208 pollen wall assembly IEP Neighborhood
BP GO:0010584 pollen exine formation IEP Neighborhood
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015114 phosphate ion transmembrane transporter activity IEP Neighborhood
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Neighborhood
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Neighborhood
BP GO:0015749 monosaccharide transmembrane transport IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
BP GO:0034219 carbohydrate transmembrane transport IEP Neighborhood
BP GO:0048444 floral organ morphogenesis IEP Neighborhood
MF GO:0051119 sugar transmembrane transporter activity IEP Neighborhood
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP Neighborhood
BP GO:0090697 post-embryonic plant organ morphogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 341 365
IPR013101 Leu-rich_rpt_2 152 177
IPR006566 FBD 534 577
No external refs found!