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  5. MA_60759g0010

MA_60759g0010


Description : promotor-binding component TFC3 of TFIIIc transcription factor complex


Gene families : OG0001366 (Archaeplastida) Phylogenetic Tree(s): OG0001366_tree ,
OG_05_0012420 (LandPlants) Phylogenetic Tree(s): OG_05_0012420_tree ,
OG_06_0013397 (SeedPlants) Phylogenetic Tree(s): OG_06_0013397_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_60759g0010
Cluster HCCA: Cluster_491

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00113670 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase III-dependent... 0.11 Archaeplastida
AT1G17450 No alias B-block binding subunit of TFIIIC 0.07 Archaeplastida
Cpa|evm.model.tig00001428.4 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.05 Archaeplastida
Cre12.g518107 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.02 Archaeplastida
GSVIVT01016771001 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.1 Archaeplastida
Gb_30476 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.04 Archaeplastida
LOC_Os02g42200.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 Archaeplastida
MA_546381g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.05 Archaeplastida
Mp1g26830.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 Archaeplastida
Pp3c4_16500V3.1 No alias B-block binding subunit of TFIIIC 0.07 Archaeplastida
Smo409587 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.06 Archaeplastida
Solyc09g009800.3.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.04 Archaeplastida
Zm00001e015829_P001 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 Archaeplastida
Zm00001e015839_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!