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  5. MA_60924g0010

MA_60924g0010


Description : Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana (sp|q9m907|pp217_arath : 1137.0)


Gene families : OG0008888 (Archaeplastida) Phylogenetic Tree(s): OG0008888_tree ,
OG_05_0008600 (LandPlants) Phylogenetic Tree(s): OG_05_0008600_tree ,
OG_06_0007808 (SeedPlants) Phylogenetic Tree(s): OG_06_0007808_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_60924g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00208290 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
AT3G06920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Gb_36884 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
LOC_Os07g14530.3 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.04 Archaeplastida
Pp3c3_19780V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Solyc01g080720.4.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 509 538
IPR002885 Pentatricopeptide_repeat 195 223
IPR002885 Pentatricopeptide_repeat 231 257
IPR002885 Pentatricopeptide_repeat 785 833
IPR002885 Pentatricopeptide_repeat 262 310
IPR002885 Pentatricopeptide_repeat 331 371
IPR002885 Pentatricopeptide_repeat 540 589
IPR002885 Pentatricopeptide_repeat 611 659
IPR002885 Pentatricopeptide_repeat 715 764
IPR002885 Pentatricopeptide_repeat 435 483
IPR002885 Pentatricopeptide_repeat 676 708
IPR002885 Pentatricopeptide_repeat 398 428
No external refs found!