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  5. AT5G56810

AT5G56810


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0001094 (Archaeplastida) Phylogenetic Tree(s): OG0001094_tree ,
OG_05_0000663 (LandPlants) Phylogenetic Tree(s): OG_05_0000663_tree ,
OG_06_0000324 (SeedPlants) Phylogenetic Tree(s): OG_06_0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56810
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G19410 No alias FBD / Leucine Rich Repeat domains containing protein 0.02 Archaeplastida
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT1G55030 No alias RNI-like superfamily protein 0.07 Archaeplastida
AT3G10750 No alias FBD domain family 0.06 Archaeplastida
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.06 Archaeplastida
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.08 Archaeplastida
AT3G49045 No alias No description available 0.04 Archaeplastida
AT3G49480 No alias Protein with RNI-like/FBD-like domains 0.07 Archaeplastida
AT3G52680 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT3G52690 No alias RNI-like superfamily protein 0.1 Archaeplastida
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 Archaeplastida
AT5G38570 No alias F-box/RNI-like superfamily protein 0.07 Archaeplastida
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.03 Archaeplastida
AT5G50270 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT5G52460 EDA41 FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 Archaeplastida
AT5G56325 No alias FBD-like domain family protein 0.06 Archaeplastida
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.07 Archaeplastida
AT5G56430 No alias F-box/FBD-like domains containing protein 0.07 Archaeplastida
AT5G56452 No alias FBD-like domain family protein 0.05 Archaeplastida
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.05 Archaeplastida
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.06 Archaeplastida
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 Archaeplastida
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0001673 male germ cell nucleus IEP Neighborhood
MF GO:0004108 citrate (Si)-synthase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008252 nucleotidase activity IEP Neighborhood
MF GO:0008253 5'-nucleotidase activity IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0010098 suspensor development IEP Neighborhood
BP GO:0010214 seed coat development IEP Neighborhood
BP GO:0010222 stem vascular tissue pattern formation IEP Neighborhood
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0030332 cyclin binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0036440 citrate synthase activity IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
CC GO:0043073 germ cell nucleus IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
BP GO:0080120 CAAX-box protein maturation IEP Neighborhood
BP GO:0080159 zygote elongation IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
InterPro domains Description Start Stop
IPR006566 FBD 357 402
IPR013101 Leu-rich_rpt_2 165 190
IPR001810 F-box_dom 16 54
No external refs found!