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  5. MA_611292g0010

MA_611292g0010


Description : DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana (sp|q38961|snm1_arath : 222.0)


Gene families : OG0002458 (Archaeplastida) Phylogenetic Tree(s): OG0002458_tree ,
OG_05_0007107 (LandPlants) Phylogenetic Tree(s): OG_05_0007107_tree ,
OG_06_0007468 (SeedPlants) Phylogenetic Tree(s): OG_06_0007468_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_611292g0010
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Gb_02140 No alias SNM interstrand crosslink repair factor 0.08 Archaeplastida
LOC_Os09g26760.1 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.04 Archaeplastida
Mp1g24430.1 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.05 Archaeplastida
Solyc08g067250.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009882_P001 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011084 DRMBL 191 295
No external refs found!