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Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 492.0)
Gene families : OG0009457 (Archaeplastida) Phylogenetic Tree(s): OG0009457_tree ,
OG_05_0093620 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0074602 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_6126791g0010 | |
| Cluster | HCCA: Cluster_197 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_04611 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.09 | Archaeplastida | |
| Gb_07336 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.04 | Archaeplastida | |
| Gb_28795 | No alias | Pentatricopeptide repeat-containing protein DOT4,... | 0.06 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 359 | 406 |
| IPR002885 | Pentatricopeptide_repeat | 461 | 508 |
| IPR002885 | Pentatricopeptide_repeat | 95 | 142 |
| IPR002885 | Pentatricopeptide_repeat | 302 | 329 |
| IPR002885 | Pentatricopeptide_repeat | 601 | 630 |
| IPR002885 | Pentatricopeptide_repeat | 172 | 197 |
| IPR002885 | Pentatricopeptide_repeat | 331 | 355 |
| IPR002885 | Pentatricopeptide_repeat | 199 | 226 |
| IPR002885 | Pentatricopeptide_repeat | 230 | 260 |
| IPR002885 | Pentatricopeptide_repeat | 435 | 460 |
| IPR002885 | Pentatricopeptide_repeat | 536 | 558 |
| No external refs found! |