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  5. MA_62815g0010

MA_62815g0010


Description : Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana (sp|q9fri5|ppr57_arath : 780.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0008608 (LandPlants) Phylogenetic Tree(s): OG_05_0008608_tree ,
OG_06_0005538 (SeedPlants) Phylogenetic Tree(s): OG_06_0005538_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_62815g0010

Target Alias Description ECC score Gene Family Method Actions
Gb_04420 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_05354 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_06193 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_06560 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_09410 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
Gb_13405 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_14323 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_17321 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_17379 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_20153 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_21441 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_21567 No alias RNA editing factor (MEF19) 0.06 Archaeplastida
Gb_23671 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_24515 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_24816 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Gb_26158 No alias RNA editing factor (OTP82) 0.1 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.06 Archaeplastida
Gb_30147 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.08 Archaeplastida
Gb_36434 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_37554 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_38417 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 433 480
IPR002885 Pentatricopeptide_repeat 164 211
IPR002885 Pentatricopeptide_repeat 303 348
IPR002885 Pentatricopeptide_repeat 534 581
IPR032867 DYW_dom 707 831
IPR002885 Pentatricopeptide_repeat 611 632
IPR002885 Pentatricopeptide_repeat 272 299
IPR002885 Pentatricopeptide_repeat 508 533
IPR002885 Pentatricopeptide_repeat 376 402
IPR002885 Pentatricopeptide_repeat 107 133
IPR002885 Pentatricopeptide_repeat 674 703
No external refs found!