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  5. MA_6329g0010

MA_6329g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 559.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_6329g0010
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
Gb_08772 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
LOC_Os02g53050.1 No alias RNA editing factor (CLB19) 0.04 Archaeplastida
LOC_Os03g32620.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os04g14130.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
LOC_Os05g24150.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.08 Archaeplastida
MA_210823g0010 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Archaeplastida
MA_59599g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.18 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.06 Archaeplastida
Smo110980 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo128850 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo134581 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc03g114660.1.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.06 Archaeplastida
Zm00001e034478_P001 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.1 Archaeplastida
Zm00001e039394_P003 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 133 181
IPR002885 Pentatricopeptide_repeat 397 444
IPR002885 Pentatricopeptide_repeat 296 342
IPR002885 Pentatricopeptide_repeat 471 496
IPR002885 Pentatricopeptide_repeat 208 234
IPR002885 Pentatricopeptide_repeat 236 266
IPR032867 DYW_dom 571 694
No external refs found!