AT5G58010 (LRL3)

Aliases : LRL3

Description : LJRHL1-like 3

Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000521 (LandPlants) Phylogenetic Tree(s): OG_05_0000521_tree ,
OG_06_0000874 (SeedPlants) Phylogenetic Tree(s): OG_06_0000874_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G58010
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00065p00184910	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AMTR_s00133p00027110	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.02	Archaeplastida
AT1G25330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
AT2G18300	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
AT4G34530	CIB1	cryptochrome-interacting basic-helix-loop-helix 1	0.05	Archaeplastida
AT5G48560	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.07	Archaeplastida
AT5G50915	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
GSVIVT01013553001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
Gb_05320	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Gb_12493	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Gb_33185	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Gb_36369	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.07	Archaeplastida
Gb_39758	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	Archaeplastida
Gb_40829	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
LOC_Os01g68700.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
LOC_Os04g41229.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os06g08500.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os06g41060.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os08g39630.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os09g25040.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os09g33580.2	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_10344244g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10435000g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_120179g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_13676g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	Archaeplastida
MA_158362g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.07	Archaeplastida
MA_158850g0010	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_465203g0020	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_52085g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_9115341g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
MA_939320g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Pp3c17_17000V3.1	No alias	LJRHL1-like 1	0.03	Archaeplastida
Pp3c21_14114V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c6_9520V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Smo402301	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	Archaeplastida
Smo425336	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.07	Archaeplastida
Smo444782	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.09	Archaeplastida
Solyc01g086870.3.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc03g113560.4.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc04g007300.4.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Solyc04g077480.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Solyc06g083170.3.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	Archaeplastida
Solyc12g010170.2.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc12g098620.2.1	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.09	Archaeplastida
Zm00001e009823_P002	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e010060_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e011084_P002	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	Archaeplastida
Zm00001e021418_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023327_P001	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	Archaeplastida
Zm00001e030754_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e032950_P002	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e034528_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e035219_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e036318_P001	No alias	transcription factor (bHLH)	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080147	root hair cell development	IMP	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0003680	AT DNA binding	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0006829	zinc ion transport	IEP	Neighborhood
BP	GO:0007043	cell-cell junction assembly	IEP	Neighborhood
BP	GO:0007154	cell communication	IEP	Neighborhood
BP	GO:0009267	cellular response to starvation	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
CC	GO:0009531	secondary cell wall	IEP	Neighborhood
BP	GO:0009647	skotomorphogenesis	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009828	plant-type cell wall loosening	IEP	Neighborhood
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	Neighborhood
BP	GO:0009991	response to extracellular stimulus	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010054	trichoblast differentiation	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
BP	GO:0010345	suberin biosynthetic process	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010411	xyloglucan metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
BP	GO:0010466	negative regulation of peptidase activity	IEP	Neighborhood
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0030162	regulation of proteolysis	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0031667	response to nutrient levels	IEP	Neighborhood
BP	GO:0031668	cellular response to extracellular stimulus	IEP	Neighborhood
BP	GO:0031669	cellular response to nutrient levels	IEP	Neighborhood
BP	GO:0034329	cell junction assembly	IEP	Neighborhood
BP	GO:0034330	cell junction organization	IEP	Neighborhood
BP	GO:0035864	response to potassium ion	IEP	Neighborhood
BP	GO:0035865	cellular response to potassium ion	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0042594	response to starvation	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044426	cell wall part	IEP	Neighborhood
CC	GO:0044462	external encapsulating structure part	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:0045216	cell-cell junction organization	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
BP	GO:0045861	negative regulation of proteolysis	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
CC	GO:0048226	Casparian strip	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048766	root hair initiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0051346	negative regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0052547	regulation of peptidase activity	IEP	Neighborhood
BP	GO:0052548	regulation of endopeptidase activity	IEP	Neighborhood
BP	GO:0055062	phosphate ion homeostasis	IEP	Neighborhood
BP	GO:0055083	monovalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0071365	cellular response to auxin stimulus	IEP	Neighborhood
BP	GO:0071496	cellular response to external stimulus	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0072506	trivalent inorganic anion homeostasis	IEP	Neighborhood
MF	GO:0072509	divalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0072732	cellular response to calcium ion starvation	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	110	155

External Links

No external refs found!

AT5G58010 (LRL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation