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Description : component VIP5/RTF1 of PAF1C transcription initiation and elongation complex
Gene families : OG0003042 (Archaeplastida) Phylogenetic Tree(s): OG0003042_tree ,
OG_05_0003234 (LandPlants) Phylogenetic Tree(s): OG_05_0003234_tree ,
OG_06_0002464 (SeedPlants) Phylogenetic Tree(s): OG_06_0002464_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_64770g0010 | |
| Cluster | HCCA: Cluster_152 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00032p00242160 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | Archaeplastida | |
| LOC_Os12g35030.1 | No alias | component VIP5/RTF1 of PAF1C transcription initiation... | 0.02 | Archaeplastida | |
| Zm00001e039723_P001 | No alias | component VIP5/RTF1 of PAF1C transcription initiation... | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Neighborhood |
| BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
| BP | GO:0036211 | protein modification process | IEP | Neighborhood |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
| BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004343 | Plus-3_dom | 250 | 356 |
| No external refs found! |