MA_65477g0010

Description : Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana (sp|q9lzp3|pp293_arath : 543.0)

Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0005504 (SeedPlants) Phylogenetic Tree(s): OG_06_0005504_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_65477g0010
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01029740001	No alias	Pentatricopeptide repeat-containing protein At3g62470,...	0.02	Archaeplastida
LOC_Os02g48122.1	No alias	Pentatricopeptide repeat-containing protein At1g77360,...	0.02	Archaeplastida
Pp3c5_26320V3.1	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.02	Archaeplastida
Solyc01g097130.4.1	No alias	Pentatricopeptide repeat-containing protein At3g62470,...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
MF	GO:0015631	tubulin binding	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0043015	gamma-tubulin binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	436	464
IPR002885	Pentatricopeptide_repeat	333	358
IPR002885	Pentatricopeptide_repeat	576	604
IPR002885	Pentatricopeptide_repeat	298	325
IPR002885	Pentatricopeptide_repeat	262	290
IPR002885	Pentatricopeptide_repeat	362	411
IPR002885	Pentatricopeptide_repeat	491	549

External Links

No external refs found!