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  5. MA_6626g0010

MA_6626g0010


Description : pre-mRNA-processing protein (PRP39)


Gene families : OG0002977 (Archaeplastida) Phylogenetic Tree(s): OG0002977_tree ,
OG_05_0002339 (LandPlants) Phylogenetic Tree(s): OG_05_0002339_tree ,
OG_06_0002649 (SeedPlants) Phylogenetic Tree(s): OG_06_0002649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_6626g0010
Cluster HCCA: Cluster_412

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00226980 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00179p00033790 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
Cre16.g670300 No alias No description available 0.03 Archaeplastida
GSVIVT01028421001 No alias No description available 0.02 Archaeplastida
Gb_23802 No alias pre-mRNA-processing protein (PRP39) 0.03 Archaeplastida
LOC_Os08g29124.1 No alias pre-mRNA-processing protein (PRP39) 0.02 Archaeplastida
Mp6g00560.1 No alias pre-mRNA-processing protein (PRP39) 0.05 Archaeplastida
Zm00001e000702_P004 No alias pre-mRNA-processing protein (PRP39) 0.04 Archaeplastida
Zm00001e038749_P003 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!