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  5. MA_68479g0010

MA_68479g0010


Description : Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana (sp|q9lq16|ppr94_arath : 411.0)


Gene families : OG0001630 (Archaeplastida) Phylogenetic Tree(s): OG0001630_tree ,
OG_05_0001046 (LandPlants) Phylogenetic Tree(s): OG_05_0001046_tree ,
OG_06_0000527 (SeedPlants) Phylogenetic Tree(s): OG_06_0000527_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_68479g0010
Cluster HCCA: Cluster_492

Target Alias Description ECC score Gene Family Method Actions
MA_12730g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 Archaeplastida
MA_78481g0010 No alias Pentatricopeptide repeat-containing protein At1g63130,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 186
IPR002885 Pentatricopeptide_repeat 67 116
IPR002885 Pentatricopeptide_repeat 417 466
IPR002885 Pentatricopeptide_repeat 487 536
IPR002885 Pentatricopeptide_repeat 277 326
IPR002885 Pentatricopeptide_repeat 557 606
IPR002885 Pentatricopeptide_repeat 347 396
IPR002885 Pentatricopeptide_repeat 207 256
No external refs found!