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  5. MA_69152g0010

MA_69152g0010


Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana (sp|q9lff1|pp281_arath : 227.0)


Gene families : OG0001265 (Archaeplastida) Phylogenetic Tree(s): OG0001265_tree ,
OG_05_0000728 (LandPlants) Phylogenetic Tree(s): OG_05_0000728_tree ,
OG_06_0003834 (SeedPlants) Phylogenetic Tree(s): OG_06_0003834_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_69152g0010
Cluster HCCA: Cluster_354

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00079500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56030,... 0.02 Archaeplastida
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
Mp1g11730.1 No alias Pentatricopeptide repeat-containing protein At1g62670,... 0.03 Archaeplastida
Smo88008 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 281 312
IPR002885 Pentatricopeptide_repeat 394 422
IPR002885 Pentatricopeptide_repeat 432 458
IPR002885 Pentatricopeptide_repeat 80 109
IPR002885 Pentatricopeptide_repeat 463 508
IPR002885 Pentatricopeptide_repeat 147 194
IPR002885 Pentatricopeptide_repeat 216 263
IPR002885 Pentatricopeptide_repeat 321 368
No external refs found!