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  5. MA_6918360g0010

MA_6918360g0010


Description : SSU processome assembly factor (UTP12)


Gene families : OG0003961 (Archaeplastida) Phylogenetic Tree(s): OG0003961_tree ,
OG_05_0029303 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0019481 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_6918360g0010
Cluster HCCA: Cluster_495

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021721.26 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Cre10.g438700 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01033690001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
LOC_Os03g05720.1 No alias SSU processome assembly factor (UTP12) 0.04 Archaeplastida
Mp2g05570.1 No alias SSU processome assembly factor (UTP12) 0.02 Archaeplastida
Smo99969 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Solyc10g039190.2.1 No alias SSU processome assembly factor (UTP12) 0.09 Archaeplastida
Zm00001e000415_P001 No alias SSU processome assembly factor (UTP12) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004057 arginyltransferase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016598 protein arginylation IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 34 71
No external refs found!