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  5. MA_6938949g0010

MA_6938949g0010


Description : Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana (sp|f4hw51|chr20_arath : 99.4)


Gene families : OG0003543 (Archaeplastida) Phylogenetic Tree(s): OG0003543_tree ,
OG_05_0003927 (LandPlants) Phylogenetic Tree(s): OG_05_0003927_tree ,
OG_06_0004978 (SeedPlants) Phylogenetic Tree(s): OG_06_0004978_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_6938949g0010
Cluster HCCA: Cluster_485

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020556.80 No alias Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_33142 No alias chromatin remodeling factor (ATRX) 0.02 Archaeplastida
Mp5g21000.1 No alias chromatin remodeling factor (ATRX) 0.02 Archaeplastida
Pp3c14_22150V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Smo441095 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Solyc04g050150.4.1 No alias chromatin remodeling factor (ATRX) 0.03 Archaeplastida
Zm00001e004650_P003 No alias Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!