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  5. AT5G59900

AT5G59900


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G59900
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.03 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 Archaeplastida
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01031896001 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.02 Archaeplastida
Gb_01582 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.02 Archaeplastida
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.02 Archaeplastida
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.02 Archaeplastida
Gb_29383 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_30066 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
Gb_35389 No alias Pentatricopeptide repeat-containing protein At4g19440,... 0.03 Archaeplastida
LOC_Os03g06910.1 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
LOC_Os03g40690.1 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.01 Archaeplastida
LOC_Os05g19390.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 Archaeplastida
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 Archaeplastida
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.02 Archaeplastida
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.02 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000712 resolution of meiotic recombination intermediates IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
CC GO:0000795 synaptonemal complex IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004049 anthranilate synthase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004647 phosphoserine phosphatase activity IEP Neighborhood
MF GO:0004821 histidine-tRNA ligase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005950 anthranilate synthase complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006427 histidyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006566 threonine metabolic process IEP Neighborhood
BP GO:0006567 threonine catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009068 aspartate family amino acid catabolic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009553 embryo sac development IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010165 response to X-ray IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
MF GO:0010427 abscisic acid binding IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016833 oxo-acid-lyase activity IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019840 isoprenoid binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030619 U1 snRNA binding IEP Neighborhood
MF GO:0030620 U2 snRNA binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031056 regulation of histone modification IEP Neighborhood
BP GO:0031060 regulation of histone methylation IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0031538 negative regulation of anthocyanin metabolic process IEP Neighborhood
BP GO:0031935 regulation of chromatin silencing IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
CC GO:0035097 histone methyltransferase complex IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0035510 DNA dealkylation IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043178 alcohol binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045931 positive regulation of mitotic cell cycle IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0048188 Set1C/COMPASS complex IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048530 fruit morphogenesis IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051570 regulation of histone H3-K9 methylation IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0070988 demethylation IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080111 DNA demethylation IEP Neighborhood
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
CC GO:0099086 synaptonemal structure IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1902275 regulation of chromatin organization IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 432 463
IPR002885 Pentatricopeptide_repeat 365 414
IPR002885 Pentatricopeptide_repeat 611 656
IPR002885 Pentatricopeptide_repeat 680 729
IPR002885 Pentatricopeptide_repeat 540 588
IPR002885 Pentatricopeptide_repeat 855 894
IPR002885 Pentatricopeptide_repeat 190 238
IPR002885 Pentatricopeptide_repeat 470 518
IPR002885 Pentatricopeptide_repeat 261 309
IPR002885 Pentatricopeptide_repeat 786 834
IPR002885 Pentatricopeptide_repeat 336 363
No external refs found!