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  5. AT5G59950

AT5G59950


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0001027 (Archaeplastida) Phylogenetic Tree(s): OG0001027_tree ,
OG_05_0000803 (LandPlants) Phylogenetic Tree(s): OG_05_0000803_tree ,
OG_06_0000994 (SeedPlants) Phylogenetic Tree(s): OG_06_0000994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G59950
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.40 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
Cre10.g462250 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
LOC_Os06g14470.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 Archaeplastida
LOC_Os08g33120.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 Archaeplastida
MA_26328g0010 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
MA_961018g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e022419_P005 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Zm00001e030972_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Zm00001e033165_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000245 spliceosomal complex assembly IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000904 cell morphogenesis involved in differentiation IEP Neighborhood
BP GO:0000919 cell plate assembly IEP Neighborhood
BP GO:0001558 regulation of cell growth IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004656 procollagen-proline 4-dioxygenase activity IEP Neighborhood
MF GO:0004738 pyruvate dehydrogenase activity IEP Neighborhood
MF GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity IEP Neighborhood
MF GO:0004802 transketolase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005747 mitochondrial respiratory chain complex I IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005874 microtubule IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006301 postreplication repair IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
BP GO:0006898 receptor-mediated endocytosis IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
BP GO:0009734 auxin-activated signaling pathway IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009819 drought recovery IEP Neighborhood
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0010119 regulation of stomatal movement IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0016604 nuclear body IEP Neighborhood
CC GO:0016607 nuclear speck IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
CC GO:0019005 SCF ubiquitin ligase complex IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019798 procollagen-proline dioxygenase activity IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
MF GO:0019901 protein kinase binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030135 coated vesicle IEP Neighborhood
CC GO:0030136 clathrin-coated vesicle IEP Neighborhood
CC GO:0030139 endocytic vesicle IEP Neighborhood
MF GO:0030276 clathrin binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031110 regulation of microtubule polymerization or depolymerization IEP Neighborhood
BP GO:0031112 positive regulation of microtubule polymerization or depolymerization IEP Neighborhood
BP GO:0031114 regulation of microtubule depolymerization IEP Neighborhood
BP GO:0031117 positive regulation of microtubule depolymerization IEP Neighborhood
CC GO:0031371 ubiquitin conjugating enzyme complex IEP Neighborhood
CC GO:0031372 UBC13-MMS2 complex IEP Neighborhood
MF GO:0031543 peptidyl-proline dioxygenase activity IEP Neighborhood
MF GO:0031545 peptidyl-proline 4-dioxygenase activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032880 regulation of protein localization IEP Neighborhood
BP GO:0032886 regulation of microtubule-based process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0035966 response to topologically incorrect protein IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0040014 regulation of multicellular organism growth IEP Neighborhood
BP GO:0042742 defense response to bacterium IEP Neighborhood
BP GO:0042752 regulation of circadian rhythm IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043243 positive regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
MF GO:0043424 protein histidine kinase binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044030 regulation of DNA methylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0045334 clathrin-coated endocytic vesicle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048768 root hair cell tip growth IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0048868 pollen tube development IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051788 response to misfolded protein IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070507 regulation of microtubule cytoskeleton organization IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072583 clathrin-dependent endocytosis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090333 regulation of stomatal closure IEP Neighborhood
CC GO:0090406 pollen tube IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
CC GO:0099080 supramolecular complex IEP Neighborhood
CC GO:0099081 supramolecular polymer IEP Neighborhood
CC GO:0099512 supramolecular fiber IEP Neighborhood
CC GO:0099513 polymeric cytoskeletal fiber IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901879 regulation of protein depolymerization IEP Neighborhood
BP GO:1901881 positive regulation of protein depolymerization IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 90 158
IPR025715 FoP_C 188 241
No external refs found!