1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G59970

AT5G59970


Description : Histone superfamily protein


Gene families : OG0000170 (Archaeplastida) Phylogenetic Tree(s): OG0000170_tree ,
OG_05_0000135 (LandPlants) Phylogenetic Tree(s): OG_05_0000135_tree ,
OG_06_0000106 (SeedPlants) Phylogenetic Tree(s): OG_06_0000106_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G59970
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00201000 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H4-type histone 0.03 Archaeplastida
AMTR_s00019p00220160 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
Cre06.g264600 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g265050 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g265200 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g265450 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g266600 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g268000 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g268400 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g271300 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g274150 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g274300 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g274900 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g275700 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g276650 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre06.g276800 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre12.g504600 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre12.g504850 No alias Chromatin organisation.histones.H4-type histone 0.07 Archaeplastida
Cre12.g505450 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre12.g506350 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre12.g506450 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre17.g708650 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Cre17.g709100 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
GSVIVT01016577001 No alias Chromatin organisation.histones.H4-type histone 0.05 Archaeplastida
GSVIVT01016578001 No alias Chromatin organisation.histones.H4-type histone 0.04 Archaeplastida
GSVIVT01025005001 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
GSVIVT01032631001 No alias Chromatin organisation.histones.H4-type histone 0.05 Archaeplastida
Gb_10373 No alias histone (H4) 0.15 Archaeplastida
Gb_10374 No alias histone (H4) 0.04 Archaeplastida
Gb_15454 No alias histone (H4) 0.03 Archaeplastida
Gb_15455 No alias histone (H4) 0.03 Archaeplastida
Gb_15458 No alias histone (H4) 0.12 Archaeplastida
Gb_20453 No alias histone (H4) 0.04 Archaeplastida
Gb_21914 No alias histone (H4) 0.11 Archaeplastida
Gb_21918 No alias histone (H4) 0.05 Archaeplastida
Gb_25031 No alias histone (H4) 0.04 Archaeplastida
Gb_28215 No alias histone (H4) 0.03 Archaeplastida
LOC_Os01g61920.1 No alias histone (H4) 0.07 Archaeplastida
LOC_Os02g45940.1 No alias histone (H4) 0.08 Archaeplastida
LOC_Os03g02780.1 No alias histone (H4) 0.07 Archaeplastida
LOC_Os04g49420.1 No alias histone (H4) 0.03 Archaeplastida
LOC_Os05g38740.1 No alias histone (H4) 0.03 Archaeplastida
LOC_Os05g39050.1 No alias histone (H4) 0.07 Archaeplastida
LOC_Os07g36500.1 No alias histone (H4) 0.06 Archaeplastida
LOC_Os09g26340.1 No alias histone (H4) 0.08 Archaeplastida
LOC_Os09g38020.1 No alias histone (H4) 0.1 Archaeplastida
LOC_Os10g39410.1 No alias histone (H4) 0.03 Archaeplastida
MA_10427181g0010 No alias histone (H4) 0.03 Archaeplastida
MA_10433778g0010 No alias histone (H4) 0.05 Archaeplastida
MA_116904g0010 No alias histone (H4) 0.09 Archaeplastida
MA_141877g0030 No alias histone (H4) 0.04 Archaeplastida
MA_234535g0010 No alias histone (H4) 0.06 Archaeplastida
MA_28618g0010 No alias histone (H4) 0.04 Archaeplastida
MA_465285g0010 No alias histone (H4) 0.05 Archaeplastida
MA_713159g0010 No alias histone (H4) 0.07 Archaeplastida
MA_73436g0010 No alias histone (H4) 0.02 Archaeplastida
MA_74102g0010 No alias histone (H4) 0.06 Archaeplastida
MA_83574g0010 No alias histone (H4) 0.03 Archaeplastida
MA_89764g0010 No alias histone (H4) 0.04 Archaeplastida
MA_9266178g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_97951g0010 No alias histone (H4) 0.03 Archaeplastida
Mp4g03080.1 No alias histone (H4) 0.02 Archaeplastida
Mp4g03090.1 No alias histone (H4) 0.04 Archaeplastida
Mp4g13430.1 No alias histone (H4) 0.05 Archaeplastida
Mp4g13440.1 No alias histone (H4) 0.04 Archaeplastida
Mp5g16840.1 No alias histone (H4) 0.03 Archaeplastida
Mp5g22460.1 No alias histone (H4) 0.04 Archaeplastida
Mp5g22470.1 No alias histone (H4) 0.04 Archaeplastida
Pp3c13_5310V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c22_22340V3.1 No alias histone H4 0.05 Archaeplastida
Pp3c4_22160V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Pp3c7_22150V3.1 No alias histone H4 0.02 Archaeplastida
Smo150847 No alias Chromatin organisation.histones.H4-type histone 0.05 Archaeplastida
Smo167497 No alias Chromatin organisation.histones.H4-type histone 0.06 Archaeplastida
Smo233579 No alias Chromatin organisation.histones.H4-type histone 0.09 Archaeplastida
Solyc04g011390.1.1 No alias histone (H4) 0.11 Archaeplastida
Solyc05g054610.1.1 No alias histone (H4) 0.12 Archaeplastida
Solyc06g005420.1.1 No alias histone (H4) 0.14 Archaeplastida
Solyc06g005430.1.1 No alias histone (H4) 0.1 Archaeplastida
Solyc06g072240.1.1 No alias histone (H4) 0.19 Archaeplastida
Solyc06g075830.2.1 No alias histone (H4) 0.16 Archaeplastida
Solyc06g075850.1.1 No alias histone (H4) 0.04 Archaeplastida
Solyc06g075930.1.1 No alias histone (H4) 0.12 Archaeplastida
Solyc06g075960.1.1 No alias histone (H4) 0.09 Archaeplastida
Solyc11g066160.1.1 No alias histone (H4) 0.15 Archaeplastida
Solyc11g072840.1.1 No alias histone (H4) 0.12 Archaeplastida
Solyc11g072860.2.1 No alias histone (H4) 0.14 Archaeplastida
Zm00001e007138_P001 No alias histone (H4) 0.07 Archaeplastida
Zm00001e009859_P001 No alias histone (H4) 0.07 Archaeplastida
Zm00001e016816_P001 No alias histone (H4) 0.06 Archaeplastida
Zm00001e019368_P001 No alias histone (H4) 0.04 Archaeplastida
Zm00001e023245_P001 No alias histone (H4) 0.06 Archaeplastida
Zm00001e025845_P001 No alias histone (H4) 0.05 Archaeplastida
Zm00001e027269_P001 No alias histone (H4) 0.07 Archaeplastida
Zm00001e034229_P001 No alias histone (H4) 0.07 Archaeplastida
Zm00001e034230_P001 No alias histone (H4) 0.06 Archaeplastida
Zm00001e034964_P001 No alias histone (H4) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001708 cell fate specification IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004170 dUTP diphosphatase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005640 nuclear outer membrane IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006949 syncytium formation IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0010224 response to UV-B IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
BP GO:0016048 detection of temperature stimulus IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019692 deoxyribose phosphate metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0022626 cytosolic ribosome IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
MF GO:0030527 structural constituent of chromatin IEP Neighborhood
CC GO:0031965 nuclear membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044030 regulation of DNA methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR035425 CENP-T/H4_C 36 96
No external refs found!