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  5. MA_71104g0010

MA_71104g0010


Description : Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana (sp|q9ltv8|pp224_arath : 640.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_71104g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00155170 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
AMTR_s00057p00087430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.08 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Cre08.g358250 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.03 Archaeplastida
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01008715001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.06 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.04 Archaeplastida
GSVIVT01015233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
GSVIVT01019116001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
GSVIVT01021246001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.04 Archaeplastida
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
GSVIVT01024233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
GSVIVT01030054001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
GSVIVT01031265001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.05 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 Archaeplastida
GSVIVT01033004001 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.04 Archaeplastida
Gb_00522 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_00862 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_01226 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_02911 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_03345 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_03474 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_06272 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_08569 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_10709 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_10903 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_12722 No alias RNA editing factor (MEF9) 0.04 Archaeplastida
Gb_16070 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_17095 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_20837 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_21064 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_21270 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_21437 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_25581 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_25737 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Gb_27521 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_27797 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27880 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Gb_28030 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
Gb_28343 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_29768 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 Archaeplastida
Gb_32447 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Gb_33210 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_34963 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_38441 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Gb_39300 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_39406 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_40432 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_40437 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
Gb_40680 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
LOC_Os01g46230.1 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.02 Archaeplastida
LOC_Os04g49520.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
LOC_Os04g51350.1 No alias RNA editing factor (AEF1) 0.04 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.02 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.02 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.06 Archaeplastida
LOC_Os07g20420.1 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.03 Archaeplastida
LOC_Os07g39090.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os08g28830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.02 Archaeplastida
LOC_Os11g37330.2 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_139163g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
MA_3612g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo111075 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo124576 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 Archaeplastida
Smo126797 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Smo411 No alias Pentatricopeptide repeat-containing protein At4g19220,... 0.04 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Solyc05g023900.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc06g035600.3.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.05 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Solyc07g042130.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Solyc11g065250.1.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.04 Archaeplastida
Solyc11g066920.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e008203_P002 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.06 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e034445_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 378 425
IPR002885 Pentatricopeptide_repeat 176 223
IPR002885 Pentatricopeptide_repeat 277 323
IPR032867 DYW_dom 551 676
IPR002885 Pentatricopeptide_repeat 453 476
No external refs found!