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  5. MA_712594g0010

MA_712594g0010


Description : Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana (sp|q5g1s8|pp241_arath : 1115.0)


Gene families : OG0006433 (Archaeplastida) Phylogenetic Tree(s): OG0006433_tree ,
OG_05_0005096 (LandPlants) Phylogenetic Tree(s): OG_05_0005096_tree ,
OG_06_0005733 (SeedPlants) Phylogenetic Tree(s): OG_06_0005733_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_712594g0010
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00265800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g18110,... 0.03 Archaeplastida
AT3G18110 EMB1270 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
GSVIVT01024457001 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.09 Archaeplastida
Gb_33699 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.04 Archaeplastida
LOC_Os06g09880.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.03 Archaeplastida
Solyc03g096830.4.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.12 Archaeplastida
Zm00001e036242_P002 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 400 430
IPR002885 Pentatricopeptide_repeat 817 845
IPR002885 Pentatricopeptide_repeat 942 1000
IPR002885 Pentatricopeptide_repeat 561 610
IPR002885 Pentatricopeptide_repeat 316 375
IPR002885 Pentatricopeptide_repeat 872 931
IPR002885 Pentatricopeptide_repeat 1116 1174
IPR002885 Pentatricopeptide_repeat 490 549
IPR002885 Pentatricopeptide_repeat 1047 1107
IPR002885 Pentatricopeptide_repeat 256 301
IPR002885 Pentatricopeptide_repeat 435 479
No external refs found!