AT5G60850 (OBP4)

Aliases : OBP4

Description : OBF binding protein 4

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0040876 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G60850
Cluster	HCCA: Cluster_238

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.01	Archaeplastida
AMTR_s00030p00153440	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT1G07640	OBP2	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT1G69570	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT2G28810	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT2G46590	DAG2	Dof-type zinc finger DNA-binding family protein	0.01	Archaeplastida
AT3G45610	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT4G00940	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
GSVIVT01007992001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	Archaeplastida
GSVIVT01019619001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.06	Archaeplastida
Gb_09906	No alias	transcription factor (DOF)	0.05	Archaeplastida
Gb_20144	No alias	transcription factor (DOF)	0.01	Archaeplastida
Gb_28499	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os01g55340.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os02g15350.1	No alias	transcription factor (DOF)	0.01	Archaeplastida
LOC_Os02g45200.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os03g07360.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os04g47990.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os04g58190.1	No alias	transcription factor (DOF)	0.01	Archaeplastida
LOC_Os05g02150.1	No alias	transcription factor (DOF)	0.01	Archaeplastida
LOC_Os07g32510.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os07g48570.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os08g38220.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Pp3c13_21190V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c17_3860V3.1	No alias	OBF binding protein 4	0.01	Archaeplastida
Pp3c6_13360V3.1	No alias	cycling DOF factor 3	0.05	Archaeplastida
Smo29617	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	Archaeplastida
Smo89924	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	Archaeplastida
Solyc02g077960.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc02g090220.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g112930.3.1	No alias	transcription factor (DOF)	0.01	Archaeplastida
Solyc03g115940.4.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g121400.1.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc11g010940.2.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e004809_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e005785_P001	No alias	transcription factor (DOF)	0.01	Archaeplastida
Zm00001e007228_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e010454_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e027411_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e041444_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0006873	cellular ion homeostasis	IEP	Neighborhood
BP	GO:0007623	circadian rhythm	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
BP	GO:0009555	pollen development	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009630	gravitropism	IEP	Neighborhood
BP	GO:0009637	response to blue light	IEP	Neighborhood
BP	GO:0009638	phototropism	IEP	Neighborhood
BP	GO:0009704	de-etiolation	IEP	Neighborhood
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010017	red or far-red light signaling pathway	IEP	Neighborhood
BP	GO:0010114	response to red light	IEP	Neighborhood
BP	GO:0010155	regulation of proton transport	IEP	Neighborhood
BP	GO:0010161	red light signaling pathway	IEP	Neighborhood
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
BP	GO:0023014	signal transduction by protein phosphorylation	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
BP	GO:0030003	cellular cation homeostasis	IEP	Neighborhood
BP	GO:0031348	negative regulation of defense response	IEP	Neighborhood
BP	GO:0031399	regulation of protein modification process	IEP	Neighborhood
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0034762	regulation of transmembrane transport	IEP	Neighborhood
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Neighborhood
BP	GO:0035303	regulation of dephosphorylation	IEP	Neighborhood
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0046777	protein autophosphorylation	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048366	leaf development	IEP	Neighborhood
BP	GO:0048511	rhythmic process	IEP	Neighborhood
BP	GO:0048513	animal organ development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0048878	chemical homeostasis	IEP	Neighborhood
BP	GO:0050801	ion homeostasis	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Neighborhood
BP	GO:0051193	regulation of cofactor metabolic process	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0055080	cation homeostasis	IEP	Neighborhood
BP	GO:0055082	cellular chemical homeostasis	IEP	Neighborhood
BP	GO:0071214	cellular response to abiotic stimulus	IEP	Neighborhood
BP	GO:0071478	cellular response to radiation	IEP	Neighborhood
BP	GO:0071482	cellular response to light stimulus	IEP	Neighborhood
BP	GO:0071489	cellular response to red or far red light	IEP	Neighborhood
BP	GO:0071491	cellular response to red light	IEP	Neighborhood
BP	GO:0090354	regulation of auxin metabolic process	IEP	Neighborhood
BP	GO:0104004	cellular response to environmental stimulus	IEP	Neighborhood
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	49	105

External Links

No external refs found!

AT5G60850 (OBP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation