AT5G60870

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG0004747 (Archaeplastida) Phylogenetic Tree(s): OG0004747_tree ,
OG_05_0004128 (LandPlants) Phylogenetic Tree(s): OG_05_0004128_tree ,
OG_06_0004157 (SeedPlants) Phylogenetic Tree(s): OG_06_0004157_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G60870
Cluster	HCCA: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c10_6070V3.1	No alias	Regulator of chromosome condensation (RCC1) family protein	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IMP	Interproscan
MF	GO:0008536	Ran GTPase binding	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010257	NADH dehydrogenase complex assembly	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0017016	Ras GTPase binding	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0031267	small GTPase binding	None	Extended
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IMP	Interproscan
BP	GO:0033108	mitochondrial respiratory chain complex assembly	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000087	mitotic M phase	IEP	Neighborhood
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	Neighborhood
BP	GO:0000279	M phase	IEP	Neighborhood
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Neighborhood
BP	GO:0001709	cell fate determination	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003880	protein C-terminal carboxyl O-methyltransferase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004532	exoribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0004671	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	IEP	Neighborhood
CC	GO:0005778	peroxisomal membrane	IEP	Neighborhood
BP	GO:0006282	regulation of DNA repair	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006481	C-terminal protein methylation	IEP	Neighborhood
BP	GO:0006513	protein monoubiquitination	IEP	Neighborhood
BP	GO:0006626	protein targeting to mitochondrion	IEP	Neighborhood
BP	GO:0006808	regulation of nitrogen utilization	IEP	Neighborhood
BP	GO:0006839	mitochondrial transport	IEP	Neighborhood
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	Neighborhood
BP	GO:0009934	regulation of meristem structural organization	IEP	Neighborhood
BP	GO:0010076	maintenance of floral meristem identity	IEP	Neighborhood
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	Neighborhood
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	IEP	Neighborhood
MF	GO:0010340	carboxyl-O-methyltransferase activity	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
BP	GO:0018410	C-terminal protein amino acid modification	IEP	Neighborhood
BP	GO:0022403	cell cycle phase	IEP	Neighborhood
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	Neighborhood
BP	GO:0031050	dsRNA fragmentation	IEP	Neighborhood
CC	GO:0031519	PcG protein complex	IEP	Neighborhood
CC	GO:0031903	microbody membrane	IEP	Neighborhood
MF	GO:0035064	methylated histone binding	IEP	Neighborhood
CC	GO:0035102	PRC1 complex	IEP	Neighborhood
BP	GO:0042278	purine nucleoside metabolic process	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0043687	post-translational protein modification	IEP	Neighborhood
BP	GO:0044848	biological phase	IEP	Neighborhood
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0048598	embryonic morphogenesis	IEP	Neighborhood
MF	GO:0051998	protein carboxyl O-methyltransferase activity	IEP	Neighborhood
MF	GO:0052381	tRNA dimethylallyltransferase activity	IEP	Neighborhood
BP	GO:0070585	protein localization to mitochondrion	IEP	Neighborhood
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	Neighborhood
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Neighborhood
BP	GO:0080156	mitochondrial mRNA modification	IEP	Neighborhood
BP	GO:0080180	2-methylguanosine metabolic process	IEP	Neighborhood
BP	GO:0090351	seedling development	IEP	Neighborhood
BP	GO:0098763	mitotic cell cycle phase	IEP	Neighborhood
MF	GO:0140030	modification-dependent protein binding	IEP	Neighborhood
MF	GO:0140034	methylation-dependent protein binding	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Neighborhood
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000408	Reg_chr_condens	171	219
IPR000408	Reg_chr_condens	332	381
IPR000408	Reg_chr_condens	385	440
IPR000408	Reg_chr_condens	222	277
IPR000408	Reg_chr_condens	118	167
IPR000408	Reg_chr_condens	49	81
IPR000408	Reg_chr_condens	280	329

External Links

No external refs found!

AT5G60870

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation