AT5G61060 (ATHDA5, HDA05, HDA5)


Aliases : ATHDA5, HDA05, HDA5

Description : histone deacetylase 5


Gene families : OG0001854 (Archaeplastida) Phylogenetic Tree(s): OG0001854_tree ,
OG_05_0005415 (LandPlants) Phylogenetic Tree(s): OG_05_0005415_tree ,
OG_06_0006816 (SeedPlants) Phylogenetic Tree(s): OG_06_0006816_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G61060
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01007870001 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
GSVIVT01008242001 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
MA_10433858g0010 No alias Histone deacetylase 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e032874_P003 No alias class-II histone deacetylase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004407 histone deacetylase activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006487 protein N-linked glycosylation RCA Interproscan
BP GO:0006635 fatty acid beta-oxidation RCA Interproscan
BP GO:0016558 protein import into peroxisome matrix RCA Interproscan
BP GO:0016575 histone deacetylation ISS Interproscan
Type GO Term Name Evidence Source
CC GO:0000164 protein phosphatase type 1 complex IEP Neighborhood
BP GO:0000919 cell plate assembly IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004311 farnesyltranstransferase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0004660 protein farnesyltransferase activity IEP Neighborhood
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005874 microtubule IEP Neighborhood
CC GO:0005965 protein farnesyltransferase complex IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
BP GO:0006898 receptor-mediated endocytosis IEP Neighborhood
MF GO:0008265 Mo-molybdopterin cofactor sulfurase activity IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP Neighborhood
BP GO:0009934 regulation of meristem structural organization IEP Neighborhood
BP GO:0009968 negative regulation of signal transduction IEP Neighborhood
BP GO:0010025 wax biosynthetic process IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0010166 wax metabolic process IEP Neighborhood
BP GO:0010648 negative regulation of cell communication IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016783 sulfurtransferase activity IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
MF GO:0019901 protein kinase binding IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
BP GO:0023057 negative regulation of signaling IEP Neighborhood
CC GO:0030135 coated vesicle IEP Neighborhood
CC GO:0030136 clathrin-coated vesicle IEP Neighborhood
CC GO:0030139 endocytic vesicle IEP Neighborhood
MF GO:0030276 clathrin binding IEP Neighborhood
BP GO:0032880 regulation of protein localization IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0043424 protein histidine kinase binding IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0045334 clathrin-coated endocytic vesicle IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
BP GO:0060147 regulation of posttranscriptional gene silencing IEP Neighborhood
BP GO:0060148 positive regulation of posttranscriptional gene silencing IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
BP GO:0072583 clathrin-dependent endocytosis IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
CC GO:0099080 supramolecular complex IEP Neighborhood
CC GO:0099081 supramolecular polymer IEP Neighborhood
CC GO:0099512 supramolecular fiber IEP Neighborhood
CC GO:0099513 polymeric cytoskeletal fiber IEP Neighborhood
BP GO:1901419 regulation of response to alcohol IEP Neighborhood
BP GO:1901420 negative regulation of response to alcohol IEP Neighborhood
BP GO:1901568 fatty acid derivative metabolic process IEP Neighborhood
BP GO:1901570 fatty acid derivative biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
BP GO:1905957 regulation of cellular response to alcohol IEP Neighborhood
BP GO:1905958 negative regulation of cellular response to alcohol IEP Neighborhood
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 46 346
No external refs found!