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  5. MA_771194g0010

MA_771194g0010


Description : Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana (sp|q9fit7|pp442_arath : 543.0)


Gene families : OG0009405 (Archaeplastida) Phylogenetic Tree(s): OG0009405_tree ,
OG_05_0009405 (LandPlants) Phylogenetic Tree(s): OG_05_0009405_tree ,
OG_06_0006571 (SeedPlants) Phylogenetic Tree(s): OG_06_0006571_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_771194g0010
Cluster HCCA: Cluster_530

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00044940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g61990,... 0.03 Archaeplastida
Gb_12831 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.07 Archaeplastida
Gb_23333 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.06 Archaeplastida
Solyc03g118280.1.1 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 489 538
IPR002885 Pentatricopeptide_repeat 664 712
IPR002885 Pentatricopeptide_repeat 594 643
IPR002885 Pentatricopeptide_repeat 349 398
IPR002885 Pentatricopeptide_repeat 839 887
IPR002885 Pentatricopeptide_repeat 419 468
IPR002885 Pentatricopeptide_repeat 737 783
IPR002885 Pentatricopeptide_repeat 944 993
IPR002885 Pentatricopeptide_repeat 279 328
IPR002885 Pentatricopeptide_repeat 213 241
IPR002885 Pentatricopeptide_repeat 807 835
IPR002885 Pentatricopeptide_repeat 181 207
IPR002885 Pentatricopeptide_repeat 1018 1044
IPR002885 Pentatricopeptide_repeat 905 937
IPR002885 Pentatricopeptide_repeat 242 273
IPR002885 Pentatricopeptide_repeat 557 587
No external refs found!