AT5G62820

Description : Uncharacterised protein family (UPF0497)

Gene families : OG0002323 (Archaeplastida) Phylogenetic Tree(s): OG0002323_tree ,
OG_05_0001530 (LandPlants) Phylogenetic Tree(s): OG_05_0001530_tree ,
OG_06_0001208 (SeedPlants) Phylogenetic Tree(s): OG_06_0001208_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G62820
Cluster	HCCA: Cluster_255

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01030259001	No alias	CASP-like protein 4B1 OS=Arabidopsis lyrata subsp. lyrata	0.03	Archaeplastida
LOC_Os03g60250.1	No alias	CASP-like protein 4B3 OS=Oryza sativa subsp. japonica...	0.06	Archaeplastida
Mp1g09310.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e027958_P002	No alias	CASP-like protein 4U1 OS=Zea mays (sp\|b6uby6\|csplg_maize : 411.0)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0016020	membrane	ISS	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
CC	GO:0005834	heterotrimeric G-protein complex	IEP	Neighborhood
BP	GO:0006301	postreplication repair	IEP	Neighborhood
BP	GO:0006623	protein targeting to vacuole	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
BP	GO:0009624	response to nematode	IEP	Neighborhood
CC	GO:0031371	ubiquitin conjugating enzyme complex	IEP	Neighborhood
CC	GO:0031372	UBC13-MMS2 complex	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0072665	protein localization to vacuole	IEP	Neighborhood
BP	GO:0072666	establishment of protein localization to vacuole	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1905360	GTPase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006702	CASP_dom	146	278

External Links

No external refs found!