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  5. AT5G62990

AT5G62990 (emb1692)


Aliases : emb1692

Description : Ubiquitin carboxyl-terminal hydrolase family protein


Gene families : OG0001104 (Archaeplastida) Phylogenetic Tree(s): OG0001104_tree ,
OG_05_0001147 (LandPlants) Phylogenetic Tree(s): OG_05_0001147_tree ,
OG_06_0002903 (SeedPlants) Phylogenetic Tree(s): OG_06_0002903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62990
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00268210 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00014p00229190 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00021p00241290 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00033p00133210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_34809 No alias WTF1 plastidial RNA basal splicing factor 0.06 Archaeplastida
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.08 Archaeplastida
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
MA_158434g0010 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
MA_175611g0010 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 Archaeplastida
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
Smo422954 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000229 cytoplasmic chromosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
CC GO:0009295 nucleoid IEP Neighborhood
CC GO:0009501 amyloplast IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009508 plastid chromosome IEP Neighborhood
CC GO:0009509 chromoplast IEP Neighborhood
CC GO:0009513 etioplast IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009532 plastid stroma IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009537 proplastid IEP Neighborhood
CC GO:0009570 chloroplast stroma IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009662 etioplast organization IEP Neighborhood
BP GO:0009668 plastid membrane organization IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010020 chloroplast fission IEP Neighborhood
BP GO:0010027 thylakoid membrane organization IEP Neighborhood
BP GO:0010239 chloroplast mRNA processing IEP Neighborhood
BP GO:0010305 leaf vascular tissue pattern formation IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031425 chloroplast RNA processing IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
CC GO:0042644 chloroplast nucleoid IEP Neighborhood
CC GO:0042646 plastid nucleoid IEP Neighborhood
BP GO:0042780 tRNA 3'-end processing IEP Neighborhood
MF GO:0042781 3'-tRNA processing endoribonuclease activity IEP Neighborhood
BP GO:0042793 plastid transcription IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043572 plastid fission IEP Neighborhood
MF GO:0043621 protein self-association IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0070180 large ribosomal subunit rRNA binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0080158 obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:0099402 plant organ development IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
BP GO:1901259 chloroplast rRNA processing IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR021099 PORR_domain 60 397
No external refs found!