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  5. MA_7844926g0010

MA_7844926g0010


Description : Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana (sp|q8l440|orrm1_arath : 112.0)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0001165 (LandPlants) Phylogenetic Tree(s): OG_05_0001165_tree ,
OG_06_0000918 (SeedPlants) Phylogenetic Tree(s): OG_06_0000918_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_7844926g0010
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00073410 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 6, chloroplastic... 0.02 Archaeplastida
AMTR_s00061p00032260 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.03 Archaeplastida
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.02 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.03 Archaeplastida
Cpa|evm.model.tig00000944.16 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.06 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_05747 No alias component psPSRP2 of small ribosomal subunit proteome 0.03 Archaeplastida
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.02 Archaeplastida
Gb_33449 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 Archaeplastida
Gb_39591 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.02 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os07g06450.1 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.02 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.03 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
Pp3c12_23420V3.1 No alias glycine-rich RNA-binding protein 3 0.02 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.03 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.04 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.03 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Zm00001e016211_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.02 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016851 magnesium chelatase activity IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Neighborhood
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 2 68
No external refs found!