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  5. MA_79051g0010

MA_79051g0010


Description : E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum (sp|p0ch30|ring1_goshi : 172.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0003158 (SeedPlants) Phylogenetic Tree(s): OG_06_0003158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_79051g0010
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00089020 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
AT1G55530 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G40830 RHC1A RING-H2 finger C1A 0.02 Archaeplastida
Cpa|evm.model.tig00000880.42 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01022973001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01024920001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_12946 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.05 Archaeplastida
Gb_22125 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os01g44240.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g74040.1 No alias Probable E3 ubiquitin-protein ligase RHC2A... 0.04 Archaeplastida
LOC_Os03g16480.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g26300.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os05g01940.1 No alias elicitor peptide precursor (proPEP) 0.02 Archaeplastida
LOC_Os06g01200.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
LOC_Os06g42700.1 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g36170.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os08g38060.1 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os10g34590.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
LOC_Os11g37230.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_227599g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c1_42450V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Pp3c2_5960V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Solyc01g104260.3.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida
Solyc05g018050.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc06g005650.2.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e024455_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e029660_P001 No alias E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis... 0.01 Archaeplastida
Zm00001e038273_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016180 snRNA processing IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034472 snRNA 3'-end processing IEP Neighborhood
BP GO:0034477 U6 snRNA 3'-end processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 77 119
No external refs found!