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  5. MA_7907g0020

MA_7907g0020


Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana (sp|q7y211|pp285_arath : 743.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_7907g0020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 Archaeplastida
AMTR_s00022p00127120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
AT1G25360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
GSVIVT01036393001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_24633 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
LOC_Os03g64370.1 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 Archaeplastida
LOC_Os04g49520.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
LOC_Os05g24150.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
LOC_Os05g38190.2 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.01 Archaeplastida
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.01 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.06 Archaeplastida
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Pp3c17_23250V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Pp3c5_15090V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Smo131170 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Smo96927 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.01 Archaeplastida
Solyc07g008480.3.1 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.03 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.07 Archaeplastida
Zm00001e009339_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e011923_P001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e023333_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.08 Archaeplastida
Zm00001e041246_P001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 94 142
IPR002885 Pentatricopeptide_repeat 597 645
IPR002885 Pentatricopeptide_repeat 1 42
IPR002885 Pentatricopeptide_repeat 295 343
IPR002885 Pentatricopeptide_repeat 396 443
IPR002885 Pentatricopeptide_repeat 194 242
IPR002885 Pentatricopeptide_repeat 497 544
IPR032867 DYW_dom 771 894
IPR002885 Pentatricopeptide_repeat 673 696
No external refs found!