MA_7928010g0010

Description : E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana (sp|q9svc6|pub22_arath : 139.0)

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_7928010g0010
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AT2G35930	PUB23	plant U-box 23	0.05	Archaeplastida
AT3G19380	PUB25	plant U-box 25	0.03	Archaeplastida
Gb_17119	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os04g34140.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os08g04470.1	No alias	U-box domain-containing protein 8 OS=Arabidopsis...	0.02	Archaeplastida
MA_10425865g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.07	Archaeplastida
MA_10432813g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.06	Archaeplastida
MA_95662g0020	No alias	U-box domain-containing protein 27 OS=Arabidopsis...	0.09	Archaeplastida
Solyc01g107980.3.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e002598_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0019842	vitamin binding	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	84

External Links

No external refs found!