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  5. MA_793801g0010

MA_793801g0010


Description : Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana (sp|q9squ6|pp216_arath : 262.0)


Gene families : OG0000306 (Archaeplastida) Phylogenetic Tree(s): OG0000306_tree ,
OG_05_0001965 (LandPlants) Phylogenetic Tree(s): OG_05_0001965_tree ,
OG_06_0074944 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_793801g0010
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 Archaeplastida
GSVIVT01038096001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.04 Archaeplastida
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 Archaeplastida
Mp1g15120.1 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.02 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 8 54
IPR002885 Pentatricopeptide_repeat 116 162
IPR002885 Pentatricopeptide_repeat 184 227
IPR002885 Pentatricopeptide_repeat 83 110
No external refs found!