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  5. MA_79619g0010

MA_79619g0010


Description : transcription factor (Trihelix)


Gene families : OG0000662 (Archaeplastida) Phylogenetic Tree(s): OG0000662_tree ,
OG_05_0000467 (LandPlants) Phylogenetic Tree(s): OG_05_0000467_tree ,
OG_06_0000568 (SeedPlants) Phylogenetic Tree(s): OG_06_0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_79619g0010
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.02 Archaeplastida
AMTR_s00041p00147950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.03 Archaeplastida
AT1G76880 No alias Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
AT3G10000 EDA31 Homeodomain-like superfamily protein 0.03 Archaeplastida
AT5G03680 PTL Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
GSVIVT01034705001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.04 Archaeplastida
Gb_07284 No alias transcription factor (Trihelix) 0.04 Archaeplastida
Gb_31300 No alias transcription factor (Trihelix) 0.03 Archaeplastida
LOC_Os04g45750.1 No alias transcription factor (Trihelix) 0.02 Archaeplastida
LOC_Os10g37240.4 No alias Trihelix transcription factor GT-2 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c18_11300V3.1 No alias Duplicated homeodomain-like superfamily protein 0.02 Archaeplastida
Solyc09g009250.3.1 No alias transcription factor (Trihelix) 0.03 Archaeplastida
Zm00001e000092_P003 No alias transcription factor (Trihelix) 0.04 Archaeplastida
Zm00001e012540_P001 No alias transcription factor (Trihelix) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!